FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index5_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20800647 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4327595 | 2.5998282 | 5.3096666 | 1 |
| CCTGG | 4336330 | 2.58888 | 6.105105 | 1 |
| GAAGA | 4496785 | 2.5738494 | 5.103631 | 2 |
| CTTCT | 4573660 | 2.545458 | 5.461748 | 1 |
| CTGGA | 4239705 | 2.4706814 | 8.576301 | 1 |
| TCCAG | 4107165 | 2.3823001 | 5.4482436 | 2 |
| CTCCT | 4026300 | 2.3100703 | 6.9917064 | 1 |
| CTGGG | 3797510 | 2.2777984 | 8.239075 | 1 |
| CAGGA | 3820985 | 2.2406025 | 5.3946385 | 1 |
| CTTCA | 3929310 | 2.200528 | 5.497368 | 1 |
| CCCAG | 3665140 | 2.191603 | 7.0988297 | 1 |
| CTCCA | 3787070 | 2.1864066 | 7.2610292 | 1 |
| CAGAA | 3731145 | 2.1256723 | 5.097262 | 1 |
| CTCTG | 3594900 | 2.0722048 | 6.342502 | 1 |
| CTGGC | 3149940 | 1.8805803 | 5.1622095 | 1 |
| TGGAA | 3289015 | 1.8708475 | 5.0748353 | 2 |
| CTGAA | 3303270 | 1.8702078 | 5.493346 | 1 |
| CTCAG | 3043920 | 1.7655807 | 5.956201 | 1 |
| CTTTG | 3072370 | 1.7179178 | 5.0947604 | 1 |
| CTTGG | 2828425 | 1.6380128 | 5.2867637 | 1 |